IL_4V9P_109

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_109 not in the Motif Atlas

Homologous match to IL_5J7L_351

Geometric discrepancy: 0.0854

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

4V9P|1|AA|C|2806
4V9P|1|AA|U|2807
4V9P|1|AA|G|2808
4V9P|1|AA|A|2809
4V9P|1|AA|A|2810
4V9P|1|AA|G|2811
*
4V9P|1|AA|C|2889
4V9P|1|AA|G|2890
4V9P|1|AA|U|2891
4V9P|1|AA|G|2892

Current chains

Chain AA

23S rRNA

Nearby chains

Chain A0

50S ribosomal protein L32

Chain AD

50S ribosomal protein L3

Chain AS

50S ribosomal protein L22