IL_4V9P_157

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_157 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2416

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V9P|1|BA|G|778
4V9P|1|BA|C|779
4V9P|1|BA|A|780
4V9P|1|BA|A|781
4V9P|1|BA|A|782
4V9P|1|BA|C|783
*
4V9P|1|BA|G|799
4V9P|1|BA|G|800
4V9P|1|BA|U|801
4V9P|1|BA|A|802
4V9P|1|BA|G|803
4V9P|1|BA|U|804

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BK

30S ribosomal protein S11

Chain BU

30S ribosomal protein S21