IL_4V9P_180

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_180 not in the Motif Atlas

Geometric match to IL_4V88_465

Geometric discrepancy: 0.1189

The information below is about IL_4V88_465

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9P|1|BA|G|1405
4V9P|1|BA|U|1406
4V9P|1|BA|C|1407
*
4V9P|1|BA|G|1494
4V9P|1|BA|U|1495
4V9P|1|BA|C|1496

Current chains

Chain BA

16S rRNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BV

elongation factor G

Chain BW

Viomycin