IL_4V9P_232

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_232 not in the Motif Atlas

Homologous match to IL_5J7L_289

Geometric discrepancy: 0.0674

The information below is about IL_5J7L_289

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V9P|1|CA|A|1262
4V9P|1|CA|U|1263
4V9P|1|CA|A|1264
4V9P|1|CA|A|1265
4V9P|1|CA|G|1266
4V9P|1|CA|U|1267
4V9P|1|CA|A|1268
4V9P|1|CA|A|1269
*
4V9P|1|CA|U|2011
4V9P|1|CA|G|2012
4V9P|1|CA|A|2013
4V9P|1|CA|A|2014
4V9P|1|CA|A|2015
4V9P|1|CA|U|2016
4V9P|1|CA|U|2017

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C0

50S ribosomal protein L32

Chain CE

50S ribosomal protein L4

Chain CS

50S ribosomal protein L22