IL_4V9P_356

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAG,CUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_356 not in the Motif Atlas

Geometric match to IL_1ZZ5_002

Geometric discrepancy: 0.1537

The information below is about IL_1ZZ5_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|DA|G|1310
4V9P|1|DA|A|1311
4V9P|1|DA|G|1312
*
4V9P|1|DA|C|1325
4V9P|1|DA|U|1326
4V9P|1|DA|C|1327

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19