IL_4V9P_405

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUG*CAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUG,CAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_405 not in the Motif Atlas

Geometric match to IL_4ZC7_004

Geometric discrepancy: 0.1836

The information below is about IL_4ZC7_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|EA|A|1057
4V9P|1|EA|U|1058
4V9P|1|EA|G|1059
*
4V9P|1|EA|C|1079
4V9P|1|EA|A|1080
4V9P|1|EA|U|1081

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E5

50S ribosomal protein L10

Chain EI

50S ribosomal protein L11