IL_4V9P_427

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_427 not in the Motif Atlas

Homologous match to IL_5J7L_304

Geometric discrepancy: 0.0965

The information below is about IL_5J7L_304

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9P|1|EA|G|1651
4V9P|1|EA|A|1652
4V9P|1|EA|G|1653
4V9P|1|EA|A|1654
4V9P|1|EA|A|1655
4V9P|1|EA|C|1656
*
4V9P|1|EA|G|2004
4V9P|1|EA|A|2005
4V9P|1|EA|C|2006

Current chains

Chain EA

23S rRNA

Nearby chains

Chain ED

50S ribosomal protein L3

Chain EN

50S ribosomal protein L17