IL_4V9P_430

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUAGG*CUGU

Length

10 nucleotides

Bulged bases

4V9P|1|EA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_430 not in the Motif Atlas

Homologous match to IL_5J7L_307

Geometric discrepancy: 0.0689

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

4V9P|1|EA|A|1669
4V9P|1|EA|C|1670
4V9P|1|EA|U|1671
4V9P|1|EA|A|1672
4V9P|1|EA|G|1673
4V9P|1|EA|G|1674
*
4V9P|1|EA|C|1990
4V9P|1|EA|U|1991
4V9P|1|EA|G|1992
4V9P|1|EA|U|1993

Current chains

Chain EA

23S rRNA

Nearby chains

Chain ED

50S ribosomal protein L3

Chain EK

50S ribosomal protein L14