IL_4V9P_451

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

4V9P|1|EA|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_451 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3962

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V9P|1|EA|U|2401
4V9P|1|EA|U|2402
4V9P|1|EA|C|2403
*
4V9P|1|EA|G|2414
4V9P|1|EA|G|2415

Current chains

Chain EA

23S rRNA

Nearby chains

Chain E1

50S ribosomal protein L33

Chain E3

50S ribosomal protein L35

Chain EL

50S ribosomal protein L15