IL_4V9P_471

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_471 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0796

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9P|1|EA|G|2843
4V9P|1|EA|G|2844
4V9P|1|EA|U|2845
4V9P|1|EA|G|2846
*
4V9P|1|EA|C|2870
4V9P|1|EA|U|2871
4V9P|1|EA|A|2872
4V9P|1|EA|A|2873
4V9P|1|EA|C|2874

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EN

50S ribosomal protein L17

Chain EP

50S ribosomal protein L19