IL_4V9P_476

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGA*UCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGA,UCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_476 not in the Motif Atlas

Geometric match to IL_3GM7_006

Geometric discrepancy: 0.1614

The information below is about IL_3GM7_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|EB|U|32
4V9P|1|EB|G|33
4V9P|1|EB|A|34
*
4V9P|1|EB|U|48
4V9P|1|EB|C|49
4V9P|1|EB|A|50

Current chains

Chain EB

5S rRNA

Nearby chains

Chain EA

Large subunit ribosomal RNA; LSU rRNA

Chain EF

50S ribosomal protein L5

Chain EO

50S ribosomal protein L18