IL_4V9P_489

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_489 not in the Motif Atlas

Homologous match to IL_5J7L_010

Geometric discrepancy: 0.0866

The information below is about IL_5J7L_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9P|1|FA|C|132
4V9P|1|FA|U|133
4V9P|1|FA|G|134
4V9P|1|FA|C|135
4V9P|1|FA|C|136
*
4V9P|1|FA|G|227
4V9P|1|FA|A|228
4V9P|1|FA|U|229
4V9P|1|FA|G|230

Current chains

Chain FA

16S rRNA

Nearby chains

Chain FP

30S ribosomal protein S16

Chain FT

30S ribosomal protein S20