3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CGACC*GCAAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9P_534 not in the Motif Atlas
Homologous match to IL_5J7L_056
Geometric discrepancy: 0.1642
The information below is about IL_5J7L_056
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V9P|1|FA|C|1259
4V9P|1|FA|G|1260
4V9P|1|FA|A|1261
4V9P|1|FA|C|1262
4V9P|1|FA|C|1263
*
4V9P|1|FA|G|1272
4V9P|1|FA|C|1273
4V9P|1|FA|A|1274
4V9P|1|FA|A|1275
4V9P|1|FA|G|1276

Current chains

Chain FA
16S rRNA

Nearby chains

Chain FN
30S ribosomal protein S14

Coloring options:


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