IL_4V9P_559

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACG,CGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_559 not in the Motif Atlas

Geometric match to IL_6IA2_004

Geometric discrepancy: 0.0961

The information below is about IL_6IA2_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V9P|1|GA|A|541
4V9P|1|GA|C|542
4V9P|1|GA|G|543
*
4V9P|1|GA|C|550
4V9P|1|GA|G|551
4V9P|1|GA|U|552

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GJ

50S ribosomal protein L13

Chain GR

50S ribosomal protein L21