IL_4V9P_579

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

4V9P|1|GA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_579 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3788

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V9P|1|GA|G|879
4V9P|1|GA|G|880
4V9P|1|GA|G|881
4V9P|1|GA|G|882
*
4V9P|1|GA|U|894
4V9P|1|GA|U|895
4V9P|1|GA|A|896
4V9P|1|GA|C|897
4V9P|1|GA|C|898

Current chains

Chain GA

23S rRNA

Nearby chains

Chain HS

30S ribosomal protein S19