IL_4V9P_590

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

4V9P|1|GA|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_590 not in the Motif Atlas

Geometric match to IL_4V9F_044

Geometric discrepancy: 0.1783

The information below is about IL_4V9F_044

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V9P|1|GA|G|1087
4V9P|1|GA|A|1088
4V9P|1|GA|A|1089
4V9P|1|GA|A|1090
*
4V9P|1|GA|U|1101
4V9P|1|GA|C|1102

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G4

50S ribosomal protein L36

Chain GI

50S ribosomal protein L11