IL_4V9P_630

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUG*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_630 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.1827

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

4V9P|1|GA|U|2098
4V9P|1|GA|U|2099
4V9P|1|GA|G|2100
*
4V9P|1|GA|U|2189
4V9P|1|GA|G|2190
4V9P|1|GA|A|2191

Current chains

Chain GA

23S rRNA

Nearby chains

Chain DG

30S ribosomal protein S7

Chain GH

50S ribosomal protein L9