IL_4V9P_632

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_632 not in the Motif Atlas

Homologous match to IL_5J7L_333

Geometric discrepancy: 0.0858

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V9P|1|GA|C|2350
4V9P|1|GA|G|2351
4V9P|1|GA|A|2352
4V9P|1|GA|G|2353
*
4V9P|1|GA|C|2364
4V9P|1|GA|G|2365
4V9P|1|GA|A|2366
4V9P|1|GA|G|2367

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G3

50S ribosomal protein L35

Chain GO

50S ribosomal protein L18

Chain GW

50S ribosomal protein L27