IL_4V9P_645

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUC*GAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GUC,GAC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_645 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1568

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V9P|1|GA|G|2592
4V9P|1|GA|U|2593
4V9P|1|GA|C|2594
*
4V9P|1|GA|G|2599
4V9P|1|GA|A|2600
4V9P|1|GA|C|2601

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GC

50S ribosomal protein L2