IL_4V9P_682

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9P_682 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1315

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9P|1|HA|U|409
4V9P|1|HA|G|410
4V9P|1|HA|A|411
4V9P|1|HA|A|412
4V9P|1|HA|G|413
4V9P|1|HA|A|414
4V9P|1|HA|A|415
4V9P|1|HA|G|416
*
4V9P|1|HA|U|427
4V9P|1|HA|G|428
4V9P|1|HA|U|429
4V9P|1|HA|A|430
4V9P|1|HA|A|431
4V9P|1|HA|A|432
4V9P|1|HA|G|433

Current chains

Chain HA

16S rRNA

Nearby chains

Chain EA

Large subunit ribosomal RNA; LSU rRNA

Chain HD

30S ribosomal protein S4