3D structure

PDB id
4V9P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Control of ribosomal subunit rotation by elongation factor G
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAC*GAAG
Length
7 nucleotides
Bulged bases
4V9P|1|HA|A|1492, 4V9P|1|HA|A|1493
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9P_727 not in the Motif Atlas
Geometric match to IL_5VCI_005
Geometric discrepancy: 0.2591
The information below is about IL_5VCI_005
Detailed Annotation
Not an internal loop
Broad Annotation
Not an internal loop
Motif group
IL_64417.2
Basepair signature
cWW-L-cWW
Number of instances in this motif group
18

Unit IDs

4V9P|1|HA|C|1407
4V9P|1|HA|A|1408
4V9P|1|HA|C|1409
*
4V9P|1|HA|G|1491
4V9P|1|HA|A|1492
4V9P|1|HA|A|1493
4V9P|1|HA|G|1494

Current chains

Chain HA
16S rRNA

Nearby chains

Chain GA
Large subunit ribosomal RNA; LSU rRNA
Chain HL
30S ribosomal protein S12
Chain HV
elongation factor G

Coloring options:


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