IL_4V9Q_025

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGC*GGAG

Length

7 nucleotides

Bulged bases

4V9Q|1|AA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_025 not in the Motif Atlas

Homologous match to IL_7RQB_025

Geometric discrepancy: 0.1759

The information below is about IL_7RQB_025

Detailed Annotation

Intercalated cWW

Broad Annotation

Intercalated cWW

Motif group

IL_52767.4

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V9Q|1|AA|C|844
4V9Q|1|AA|G|845
4V9Q|1|AA|C|846
*
4V9Q|1|AA|G|931
4V9Q|1|AA|G|932
4V9Q|1|AA|A|933
4V9Q|1|AA|G|934

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AZ

50S ribosomal protein L30