IL_4V9Q_029

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_029 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.0708

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

4V9Q|1|AA|G|864
4V9Q|1|AA|C|865
4V9Q|1|AA|A|866
4V9Q|1|AA|C|867
4V9Q|1|AA|U|868
*
4V9Q|1|AA|A|909
4V9Q|1|AA|A|910
4V9Q|1|AA|A|911
4V9Q|1|AA|C|912

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AB

5S ribosomal RNA; 5S rRNA

Chain AM

50S ribosomal protein L16

Chain AV

50S ribosomal protein L25