IL_4V9Q_050

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_050 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2326

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V9Q|1|AA|U|1357
4V9Q|1|AA|G|1358
4V9Q|1|AA|A|1359
4V9Q|1|AA|A|1360
4V9Q|1|AA|G|1361
*
4V9Q|1|AA|C|1370
4V9Q|1|AA|G|1371
4V9Q|1|AA|U|1372
4V9Q|1|AA|A|1373
4V9Q|1|AA|G|1374

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain A4

50S ribosomal protein L34

Chain AD

50S ribosomal protein L2

Chain AX

50S ribosomal protein L28