IL_4V9Q_081
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- GCGUAGGAUAG*CC
- Length
- 13 nucleotides
- Bulged bases
- 4V9Q|1|AA|C|2111, 4V9Q|1|AA|G|2116, 4V9Q|1|AA|A|2117, 4V9Q|1|AA|U|2118
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_081 not in the Motif Atlas
- Geometric match to IL_7V9E_001
- Geometric discrepancy: 0.2154
- The information below is about IL_7V9E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_82107.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 34
Unit IDs
4V9Q|1|AA|G|2110
4V9Q|1|AA|C|2111
4V9Q|1|AA|G|2112
4V9Q|1|AA|U|2113
4V9Q|1|AA|A|2114
4V9Q|1|AA|G|2115
4V9Q|1|AA|G|2116
4V9Q|1|AA|A|2117
4V9Q|1|AA|U|2118
4V9Q|1|AA|A|2119
4V9Q|1|AA|G|2120
*
4V9Q|1|AA|C|2178
4V9Q|1|AA|C|2179
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain BW
- Transfer RNA; tRNA
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