IL_4V9Q_091

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*UGG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_091 not in the Motif Atlas

Homologous match to IL_4WF9_094

Geometric discrepancy: 0.0822

The information below is about IL_4WF9_094

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

4V9Q|1|AA|C|2507
4V9Q|1|AA|G|2508
*
4V9Q|1|AA|U|2580
4V9Q|1|AA|G|2581
4V9Q|1|AA|G|2582

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3