IL_4V9Q_101

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CU*AUAG*G

Length

7 nucleotides

Bulged bases

4V9Q|1|AA|U|2712, 4V9Q|1|AA|A|2713

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_101 not in the Motif Atlas

Geometric match to IL_5TBW_109

Geometric discrepancy: 0.1753

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V9Q|1|AA|C|2695
4V9Q|1|AA|U|2696
*
4V9Q|1|AA|A|2711
4V9Q|1|AA|U|2712
4V9Q|1|AA|A|2713
4V9Q|1|AA|G|2714
*
4V9Q|1|AA|G|2714

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AN

50S ribosomal protein L17

Chain AP

50S ribosomal protein L19