IL_4V9Q_119

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUACC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_119 not in the Motif Atlas

Homologous match to IL_4LFB_008

Geometric discrepancy: 0.0928

The information below is about IL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

4V9Q|1|BA|C|132
4V9Q|1|BA|U|133
4V9Q|1|BA|A|134
4V9Q|1|BA|C|135
4V9Q|1|BA|C|136
*
4V9Q|1|BA|G|227
4V9Q|1|BA|A|228
4V9Q|1|BA|U|229
4V9Q|1|BA|G|230

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BP

30S ribosomal protein S16

Chain BT

30S ribosomal protein S20