IL_4V9Q_158

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4V9Q|1|BA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_158 not in the Motif Atlas

Geometric match to IL_2PN3_003

Geometric discrepancy: 0.3178

The information below is about IL_2PN3_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V9Q|1|BA|C|1060
4V9Q|1|BA|G|1061
*
4V9Q|1|BA|C|1195
4V9Q|1|BA|U|1196
4V9Q|1|BA|G|1197

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BE

30S ribosomal protein S5

Chain BI

30S ribosomal protein S9

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14