IL_4V9Q_177

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

4V9Q|1|BA|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_177 not in the Motif Atlas

Homologous match to IL_6CZR_172

Geometric discrepancy: 0.3676

The information below is about IL_6CZR_172

Detailed Annotation

Isolated basepair with bulged bases

Broad Annotation

Isolated basepair with bulged bases

Motif group

IL_97255.3

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4V9Q|1|BA|C|1440
4V9Q|1|BA|G|1441
4V9Q|1|BA|G|1442
4V9Q|1|BA|G|1443
4V9Q|1|BA|A|1446
4V9Q|1|BA|G|1447
*
4V9Q|1|BA|C|1459
4V9Q|1|BA|A|1460
4V9Q|1|BA|G|1461

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain AP

50S ribosomal protein L19

Chain BT

30S ribosomal protein S20