IL_4V9Q_192

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_192 not in the Motif Atlas

Geometric match to IL_4WF9_017

Geometric discrepancy: 0.0664

The information below is about IL_4WF9_017

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V9Q|1|CA|C|564
4V9Q|1|CA|C|565
4V9Q|1|CA|U|566
*
4V9Q|1|CA|A|575
4V9Q|1|CA|U|576
4V9Q|1|CA|G|577

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CL

50S ribosomal protein L15

Chain CQ

50S ribosomal protein L20

Chain CR

50S ribosomal protein L21