IL_4V9Q_200

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4V9Q|1|CA|G|776, 4V9Q|1|CA|A|788, 4V9Q|1|CA|A|789, 4V9Q|1|CA|C|790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_200 not in the Motif Atlas

Geometric match to IL_7A0S_021

Geometric discrepancy: 0.0692

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V9Q|1|CA|G|775
4V9Q|1|CA|G|776
4V9Q|1|CA|A|777
*
4V9Q|1|CA|U|787
4V9Q|1|CA|A|788
4V9Q|1|CA|A|789
4V9Q|1|CA|C|790
4V9Q|1|CA|C|791

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C4

50S ribosomal protein L34

Chain CD

50S ribosomal protein L2

Chain CF

50S ribosomal protein L4

Chain CS

50S ribosomal protein L22