IL_4V9Q_205

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_205 not in the Motif Atlas

Homologous match to IL_4WF9_032

Geometric discrepancy: 0.1453

The information below is about IL_4WF9_032

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

44

Unit IDs

4V9Q|1|CA|G|862
4V9Q|1|CA|A|863
*
4V9Q|1|CA|U|913
4V9Q|1|CA|C|914
4V9Q|1|CA|C|915

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CM

50S ribosomal protein L16

Chain CV

50S ribosomal protein L25