IL_4V9Q_216

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAGUG*CUUAAG

Length

13 nucleotides

Bulged bases

4V9Q|1|CA|U|1142, 4V9Q|1|CA|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_216 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1005

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V9Q|1|CA|C|1018
4V9Q|1|CA|U|1019
4V9Q|1|CA|A|1020
4V9Q|1|CA|A|1021
4V9Q|1|CA|G|1022
4V9Q|1|CA|U|1023
4V9Q|1|CA|G|1024
*
4V9Q|1|CA|C|1140
4V9Q|1|CA|U|1141
4V9Q|1|CA|U|1142
4V9Q|1|CA|A|1142|||B
4V9Q|1|CA|A|1143
4V9Q|1|CA|G|1144

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CB

5S ribosomal RNA; 5S rRNA

Chain CH

50S ribosomal protein L6

Chain CJ

50S ribosomal protein L13