IL_4V9Q_258

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V9Q|1|CA|C|2111, 4V9Q|1|CA|G|2116, 4V9Q|1|CA|A|2117, 4V9Q|1|CA|U|2118

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_258 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2156

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V9Q|1|CA|G|2110
4V9Q|1|CA|C|2111
4V9Q|1|CA|G|2112
4V9Q|1|CA|U|2113
4V9Q|1|CA|A|2114
4V9Q|1|CA|G|2115
4V9Q|1|CA|G|2116
4V9Q|1|CA|A|2117
4V9Q|1|CA|U|2118
4V9Q|1|CA|A|2119
4V9Q|1|CA|G|2120
*
4V9Q|1|CA|C|2178
4V9Q|1|CA|C|2179

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain DW

Transfer RNA; tRNA