IL_4V9Q_264

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_264 not in the Motif Atlas

Geometric match to IL_7RQB_092

Geometric discrepancy: 0.0657

The information below is about IL_7RQB_092

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_27635.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

38

Unit IDs

4V9Q|1|CA|G|2454
4V9Q|1|CA|G|2455
*
4V9Q|1|CA|C|2496
4V9Q|1|CA|A|2497
4V9Q|1|CA|C|2498

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L3

Chain CM

50S ribosomal protein L16