IL_4V9Q_265

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_265 not in the Motif Atlas

Geometric match to IL_4WF9_091

Geometric discrepancy: 0.1523

The information below is about IL_4WF9_091

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

4V9Q|1|CA|U|2457
4V9Q|1|CA|G|2458
4V9Q|1|CA|A|2459
*
4V9Q|1|CA|U|2493
4V9Q|1|CA|G|2494

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CM

50S ribosomal protein L16

Chain DV

Transfer RNA; tRNA