IL_4V9Q_269

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

4V9Q|1|CA|G|2576, 4V9Q|1|CA|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_269 not in the Motif Atlas

Homologous match to IL_7RQB_097

Geometric discrepancy: 0.0763

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

4V9Q|1|CA|C|2510
4V9Q|1|CA|U|2511
4V9Q|1|CA|C|2512
*
4V9Q|1|CA|G|2574
4V9Q|1|CA|C|2575
4V9Q|1|CA|G|2576
4V9Q|1|CA|A|2577
4V9Q|1|CA|G|2578

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain C2

50S ribosomal protein L32

Chain CE

50S ribosomal protein L3