IL_4V9Q_273

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V9Q|1|CA|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_273 not in the Motif Atlas

Geometric match to IL_5TBW_123

Geometric discrepancy: 0.3076

The information below is about IL_5TBW_123

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V9Q|1|CA|C|2591
4V9Q|1|CA|G|2592
*
4V9Q|1|CA|C|2601
4V9Q|1|CA|A|2602
4V9Q|1|CA|G|2603

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CD

50S ribosomal protein L2

Chain DV

Transfer RNA; tRNA