IL_4V9Q_306

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

4V9Q|1|DA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_306 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1233

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9Q|1|DA|G|409
4V9Q|1|DA|G|410
4V9Q|1|DA|A|411
4V9Q|1|DA|A|412
4V9Q|1|DA|G|413
4V9Q|1|DA|A|414
4V9Q|1|DA|A|415
4V9Q|1|DA|G|416
*
4V9Q|1|DA|U|427
4V9Q|1|DA|G|428
4V9Q|1|DA|U|429
4V9Q|1|DA|A|430
4V9Q|1|DA|A|431
4V9Q|1|DA|A|432
4V9Q|1|DA|C|433

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DD

30S ribosomal protein S4