3D structure

PDB id
4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGACG*CGGUAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9Q_307 not in the Motif Atlas
Geometric match to IL_4LFB_018
Geometric discrepancy: 0.1168
The information below is about IL_4LFB_018
Detailed Annotation
6x5 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_88269.4
Basepair signature
cWW-tWW-cSH-tWH-tHS-cWW
Number of instances in this motif group
3

Unit IDs

4V9Q|1|DA|G|446
4V9Q|1|DA|G|447
4V9Q|1|DA|A|448
4V9Q|1|DA|C|449
4V9Q|1|DA|G|450
*
4V9Q|1|DA|C|483
4V9Q|1|DA|G|484
4V9Q|1|DA|G|485
4V9Q|1|DA|U|486
4V9Q|1|DA|A|487
4V9Q|1|DA|C|488

Current chains

Chain DA
16S ribosomal RNA

Nearby chains

Chain DD
30S ribosomal protein S4
Chain DP
30S ribosomal protein S16

Coloring options:


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