IL_4V9Q_344

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CCAC*GGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_344 not in the Motif Atlas

Geometric match to IL_5J7L_256

Geometric discrepancy: 0.3372

The information below is about IL_5J7L_256

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V9Q|1|DA|C|1259
4V9Q|1|DA|C|1260
4V9Q|1|DA|A|1261
4V9Q|1|DA|C|1262
*
4V9Q|1|DA|G|1273
4V9Q|1|DA|G|1274
4V9Q|1|DA|A|1275
4V9Q|1|DA|G|1276

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DU

30S ribosomal protein Thx