IL_4V9Q_355

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

4V9Q|1|AA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_355 not in the Motif Atlas

Homologous match to IL_9DFE_050

Geometric discrepancy: 0.3529

The information below is about IL_9DFE_050

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

4V9Q|1|AA|G|1319
4V9Q|1|AA|C|1320
4V9Q|1|AA|A|1321
4V9Q|1|AA|A|1322
4V9Q|1|AA|U|1323
*
4V9Q|1|AA|A|1331
4V9Q|1|AA|G|1332
4V9Q|1|AA|C|1333

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L22

Chain AT

50S ribosomal protein L23