IL_4V9Q_356

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_356 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0671

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

4V9Q|1|AA|G|1666
4V9Q|1|AA|G|1667
4V9Q|1|AA|A|1668
4V9Q|1|AA|A|1669
4V9Q|1|AA|C|1670
4V9Q|1|AA|U|1671
4V9Q|1|AA|C|1672
4V9Q|1|AA|U|1673
4V9Q|1|AA|G|1674
*
4V9Q|1|AA|C|1990
4V9Q|1|AA|U|1991
4V9Q|1|AA|G|1992
4V9Q|1|AA|U|1993
4V9Q|1|AA|C|1994

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L3

Chain AK

50S ribosomal protein L14