IL_4V9Q_361
3D structure
- PDB id
- 4V9Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CCG*CUGG
- Length
- 7 nucleotides
- Bulged bases
- 4V9Q|1|BA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9Q_361 not in the Motif Atlas
- Homologous match to IL_4LFB_047
- Geometric discrepancy: 0.4565
- The information below is about IL_4LFB_047
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_28037.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 65
Unit IDs
4V9Q|1|BA|C|1059
4V9Q|1|BA|C|1060
4V9Q|1|BA|G|1061
*
4V9Q|1|BA|C|1195
4V9Q|1|BA|U|1196
4V9Q|1|BA|G|1197
4V9Q|1|BA|G|1198
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BC
- 30S ribosomal protein S3
- Chain BE
- 30S ribosomal protein S5
- Chain BI
- 30S ribosomal protein S9
- Chain BJ
- 30S ribosomal protein S10
- Chain BN
- 30S ribosomal protein S14
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