IL_4V9Q_382

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V9Q|1|DA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9Q_382 not in the Motif Atlas

Homologous match to IL_6CZR_150

Geometric discrepancy: 0.3583

The information below is about IL_6CZR_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|DA|G|953
4V9Q|1|DA|G|954
*
4V9Q|1|DA|C|1226
4V9Q|1|DA|A|1227
4V9Q|1|DA|C|1228

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DM

30S ribosomal protein S13

Chain DS

30S ribosomal protein S19

Chain DV

Transfer RNA; tRNA