IL_4V9S_020

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_020 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1771

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9S|1|AA|G|450
4V9S|1|AA|A|451
4V9S|1|AA|A|452
4V9S|1|AA|A|453
4V9S|1|AA|C|454
4V9S|1|AA|C|455
4V9S|1|AA|C|456
*
4V9S|1|AA|G|475
4V9S|1|AA|G|476
4V9S|1|AA|A|477
4V9S|1|AA|C|479
4V9S|1|AA|U|480
4V9S|1|AA|G|481
4V9S|1|AA|A|482
4V9S|1|AA|C|483

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains

Chain AP

30S Ribosomal Protein S16