IL_4V9S_063

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_063 not in the Motif Atlas

Homologous match to IL_7RQB_001

Geometric discrepancy: 0.0425

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|BA|G|24
4V9S|1|BA|U|25
4V9S|1|BA|G|26
4V9S|1|BA|G|27
4V9S|1|BA|A|28
4V9S|1|BA|U|29
4V9S|1|BA|G|30
*
4V9S|1|BA|C|535
4V9S|1|BA|U|536
4V9S|1|BA|G|537
4V9S|1|BA|A|538
4V9S|1|BA|A|539
4V9S|1|BA|A|540
4V9S|1|BA|C|541

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B5

50S Ribosomal Protein L32

Chain BU

50S Ribosomal Protein L20

Chain BW

50S Ribosomal Protein L22