IL_4V9S_069

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_069 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0552

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V9S|1|BA|U|228
4V9S|1|BA|G|229
4V9S|1|BA|A|230
4V9S|1|BA|G|231
4V9S|1|BA|U|232
4V9S|1|BA|A|233
4V9S|1|BA|G|234
*
4V9S|1|BA|C|242
4V9S|1|BA|G|243
4V9S|1|BA|A|244
4V9S|1|BA|A|245
4V9S|1|BA|A|246
4V9S|1|BA|G|247

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B8

50S Ribosomal Protein L35

Chain BP

50S Ribosomal Protein L15