IL_4V9S_084

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGA*UAACC

Length

8 nucleotides

Bulged bases

4V9S|1|BA|G|823, 4V9S|1|BA|A|835, 4V9S|1|BA|A|836, 4V9S|1|BA|C|837

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9S_084 not in the Motif Atlas

Homologous match to IL_7RQB_023

Geometric discrepancy: 0.0978

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V9S|1|BA|G|822
4V9S|1|BA|G|823
4V9S|1|BA|A|824
*
4V9S|1|BA|U|834
4V9S|1|BA|A|835
4V9S|1|BA|A|836
4V9S|1|BA|C|837
4V9S|1|BA|C|838

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34

Chain BD

50S Ribosomal Protein L2

Chain BF

50S Ribosomal Protein L4

Chain BW

50S Ribosomal Protein L22